Protein ZmBAF60_9
ZmBAF60_9 is a protein in the SWI/SNF-BAF60 family.
Information
Coreg Name: ZmBAF60_9
Species: Maize
Coreg Family: SWI/SNF-BAF60
Gene Name(Synonym):
Uniprot ID: B4FEM9
Subgenome: 2

Protein ZmBAF60_9

ZmBAF60_9 is a protein in the SWI/SNF-BAF60 family.

Overview of domains present in v5 transcripts
PF02201PF08766
Zm00001eb433030_T003
Zm00001eb433030_T001
Zm00001eb433030_T002
Zm00001eb433030_T004

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d026541DAPseq no logo sequence fimo position
Zm00001d026541DAPseq no logo sequence fimo position
Zm00001d026541ChIPseq no logo sequence fimo position
Zm00001d026541PChIPseq no logo sequence fimo position

Interactions where ZmBAF60_9 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmBAF60_9 is the target  
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There are 151 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb433030_T003 from maize genome v5

Amino Acid Sequence
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MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF08766
PF02201
PF08766
PF02201
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Nucleotide Sequence
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GGAGAGAGGGAGAGGCCGAGGAGAG...

GRMZM2G124502_T01 from maize genome v3

Amino Acid Sequence
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MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

Nucleotide Sequence
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AACAAAACATAGGGCAAGAGCCTAG...

GRMZM2G124502_T02 from maize genome v3

Amino Acid Sequence
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MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

Nucleotide Sequence
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AACAAAACATAGGGCAAGAGCCTAG...

GRMZM2G124502_T03 from maize genome v3


Related TFome: pUT5557

Amino Acid Sequence
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MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGAATGGTVSFQQPAPGAGGTASPTAAPQVAGDN
KESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQNNLQDPDDKRKIICNDELRVVFETDNTDMFK
MNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALAKFIGTDGTFPHDFALKYLWDYIKANQLEDVI
NESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

Nucleotide Sequence
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CACGCTCCCGCCATGGTGTCCGACC...

Zm00001d026541_T001 from maize genome v4

Amino Acid Sequence
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MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQVLNFIVIEIYT
LCTLLNNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVI
SDALAKFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

Nucleotide Sequence
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GGAGAGAGGGAGAGGCCGAGGAGAG...

Zm00001d026541_T002 from maize genome v4

Amino Acid Sequence
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MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

Nucleotide Sequence
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GGAGAGAGGGAGAGGCCGAGGAGAG...

Zm00001d026541_T003 from maize genome v4

Amino Acid Sequence
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MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

Nucleotide Sequence
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GGAGAGAGGGAGAGGCCGAGGAGAG...

Zm00001d026541_T004 from maize genome v4

Amino Acid Sequence
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MDLFFGPRLQPQPLTTPQLAPPPPQAVVAPADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPV
PVVSAPPAMAFYPPPPLAFRYTTGLAGAATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAI
SPELQTIVGETAMSRTQIVKQLWAYIRQNNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEV
KRMKAPTMSPQPGRSIDQPSIVISDALAKFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPM
SGLSEMLGHHFIKKT

Nucleotide Sequence
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AAAGGGGAGAGACCAAGGCGGGCTT...

Zm00001d026541_T005 from maize genome v4

Amino Acid Sequence
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MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQVLNFIVIEIYT
LCTLLVLFE

Nucleotide Sequence
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ACGCTCCCGCCATGGTGTCCGACCA...

Zm00001d026541_T006 from maize genome v4

Amino Acid Sequence
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MFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALAKFIGTDGTFPHDFALKYLWDYIKANQLE
DVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

Nucleotide Sequence
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ATTCAGATTGTGAAGCAGCTCTGGG...

Zm00001eb433030_T001 from maize genome v5

Amino Acid Sequence
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MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGAATGGTVSFQQPAPGAGGTASPTAAPQVAGDN
KESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQKVNFMK

Nucleotide Sequence
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CCTCATCTTATTTTCATCGCTCCCG...

Zm00001eb433030_T002 from maize genome v5

Amino Acid Sequence
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MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQVLPQAPPSAQQMQPQQLAPLQPQLMFQTIHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGA
ATGGTVSFQQPAPGAGGTASPTAAPQVAGDNKESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQ
NNLQDPDDKRKIICNDELRVVFETDNTDMFKMNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALA
KFIGTDGTFPHDFALKYLWDYIKANQLEDVINESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

Nucleotide Sequence
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GGAGAGAGGGAGAGGCCGAGGAGAG...

Zm00001eb433030_T004 from maize genome v5

Amino Acid Sequence
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MVSDQEIASCVESVLRGSAGGPGEVSLTAVLQQAEATLGVDLSHKAGFIRDQMDLFFGPRLQPQPLTTPQLAPPPPQAVV
APADAVPQPQPQHQLPAISPVPVVSAPPAMAFYPPPPLAFRYTTGLAGAATGGTVSFQQPAPGAGGTASPTAAPQVAGDN
KESSSKRKRGGPGGLNKVCAISPELQTIVGETAMSRTQIVKQLWAYIRQNNLQDPDDKRKIICNDELRVVFETDNTDMFK
MNKLLAKHITPLDPKGQLHEVKRMKAPTMSPQPGRSIDQPSIVISDALAKFIGTDGTFPHDFALKYLWDYIKANQLEDVI
NESILCDSKLQELFGCESIPMSGLSEMLGHHFIKKT

Nucleotide Sequence
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GGAGAGAGGGAGAGGCCGAGGAGAG...


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